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Free genetics software developed by Panzea and/or collaborators:
- TASSEL- A Java software package to evaluate trait associations, evolutionary patterns, and linkage disequilibrium.
- PowerMarker - A comprehensive set of statistical methods for discrete genetic data analysis, designed especially for SNP/SSR data analysis. Also includes a nice 2D Viewer and CoreSet (Line Selection) batch system.
- HYPHY - A free multiplatform (Mac, Windows and UNIX) software package intended to perform maximum likelihood analyses of genetic sequence data and equipped with tools to test various statistical hypotheses.
- Look-Align - An interactive web-based application for displaying pre-computed multiple sequence alignments.
- DNAAlignEditor - A general-purpose interface for manual editing of sequence alignments after initial alignment by ClustalW or MUSCLE. Multiple sequences (and quality scores) can be imported into the system using three different file formats: Fasta, phrap ace, and standard format.
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